IL_3JCD_064

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_064 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2496

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

3JCD|1|A|U|1720
3JCD|1|A|G|1721
3JCD|1|A|A|1722
3JCD|1|A|G|1723
3JCD|1|A|G|1724
3JCD|1|A|U|1725
*
3JCD|1|A|A|1735
3JCD|1|A|U|1736
3JCD|1|A|G|1737
3JCD|1|A|G|1738
3JCD|1|A|A|1739
3JCD|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains