IL_3JCD_130

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_130 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2973

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3JCD|1|a|G|450
3JCD|1|a|A|451
3JCD|1|a|A|452
3JCD|1|a|G|453
3JCD|1|a|G|454
3JCD|1|a|G|455
*
3JCD|1|a|C|477
3JCD|1|a|A|478
3JCD|1|a|U|479
3JCD|1|a|U|480
3JCD|1|a|G|481
3JCD|1|a|A|482
3JCD|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16