IL_3JCD_133

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

3JCD|1|a|A|572, 3JCD|1|a|A|573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_133 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1844

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

3JCD|1|a|C|569
3JCD|1|a|G|570
3JCD|1|a|U|571
3JCD|1|a|A|572
3JCD|1|a|A|573
3JCD|1|a|A|574
3JCD|1|a|G|575
*
3JCD|1|a|C|880
3JCD|1|a|G|881

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17