IL_3JCD_136

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGU*AUACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_136 not in the Motif Atlas

Homologous match to IL_6CZR_136

Geometric discrepancy: 0.5396

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

3JCD|1|a|A|596
3JCD|1|a|G|597
3JCD|1|a|U|598
*
3JCD|1|a|A|640
3JCD|1|a|U|641
3JCD|1|a|A|642
3JCD|1|a|C|643
3JCD|1|a|U|644

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17