IL_3JCD_160

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3JCD|1|a|C|1400, 3JCD|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_160 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1515

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

3JCD|1|a|C|1399
3JCD|1|a|C|1400
3JCD|1|a|G|1401
*
3JCD|1|a|C|1501
3JCD|1|a|A|1502
3JCD|1|a|A|1503
3JCD|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain 8

Transfer RNA; tRNA