IL_3JCD_178

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_178 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1041

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCD|1|A|U|1851
3JCD|1|A|U|1852
3JCD|1|A|A|1853
3JCD|1|A|A|1854
3JCD|1|A|U|1855
3JCD|1|A|U|1856
3JCD|1|A|G|1857
3JCD|1|A|A|1858
3JCD|1|A|U|1859
3JCD|1|A|G|1860
*
3JCD|1|A|U|1882
3JCD|1|A|U|1883
3JCD|1|A|G|1884
3JCD|1|A|A|1885
3JCD|1|A|U|1886
3JCD|1|A|C|1887
3JCD|1|A|G|1888
3JCD|1|A|A|1889
3JCD|1|A|A|1890
3JCD|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1

Chain 9

Transfer RNA; tRNA