IL_3JCE_022

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

3JCE|1|A|U|846, 3JCE|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_022 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3133

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

3JCE|1|A|A|844
3JCE|1|A|A|845
3JCE|1|A|U|846
3JCE|1|A|U|847
3JCE|1|A|C|848
*
3JCE|1|A|G|930
3JCE|1|A|U|931
3JCE|1|A|U|932
3JCE|1|A|A|933
3JCE|1|A|U|934

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30