IL_3JCE_028

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_028 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2455

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JCE|1|A|G|875
3JCE|1|A|C|876
3JCE|1|A|A|877
3JCE|1|A|A|878
3JCE|1|A|G|879
*
3JCE|1|A|C|898
3JCE|1|A|A|899
3JCE|1|A|A|900
3JCE|1|A|C|901
3JCE|1|A|C|902

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA