IL_3JCE_033

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

3JCE|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_033 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1518

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3JCE|1|A|U|1018
3JCE|1|A|U|1019
3JCE|1|A|A|1020
3JCE|1|A|A|1021
3JCE|1|A|G|1022
3JCE|1|A|U|1023
3JCE|1|A|G|1024
*
3JCE|1|A|C|1140
3JCE|1|A|U|1141
3JCE|1|A|A|1142
3JCE|1|A|A|1143
3JCE|1|A|A|1144

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13