3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
3JCE|1|A|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCE_089 not in the Motif Atlas
Geometric match to IL_5J7L_337
Geometric discrepancy: 0.2112
The information below is about IL_5J7L_337
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

3JCE|1|A|A|2459
3JCE|1|A|U|2460
3JCE|1|A|A|2461
*
3JCE|1|A|U|2489
3JCE|1|A|G|2490
3JCE|1|A|U|2491
3JCE|1|A|U|2492
3JCE|1|A|U|2493

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain M
50S ribosomal protein L16
Chain x
Elongation factor 4

Coloring options:


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