IL_3JCE_115

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

3JCE|1|a|G|64, 3JCE|1|a|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_115 not in the Motif Atlas

Homologous match to IL_6CZR_117

Geometric discrepancy: 0.1292

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

3JCE|1|a|C|63
3JCE|1|a|G|64
3JCE|1|a|A|65
3JCE|1|a|A|66
*
3JCE|1|a|U|103
3JCE|1|a|G|104

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20