IL_3JCE_129

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

3JCE|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_129 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1438

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3JCE|1|a|U|409
3JCE|1|a|G|410
3JCE|1|a|A|411
3JCE|1|a|A|412
3JCE|1|a|G|413
3JCE|1|a|A|414
3JCE|1|a|A|415
3JCE|1|a|G|416
*
3JCE|1|a|U|427
3JCE|1|a|G|428
3JCE|1|a|U|429
3JCE|1|a|A|430
3JCE|1|a|A|431
3JCE|1|a|A|432
3JCE|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4