IL_3JCE_167

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_167 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2068

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JCE|1|a|G|1405
3JCE|1|a|U|1406
3JCE|1|a|C|1407
*
3JCE|1|a|G|1494
3JCE|1|a|U|1495
3JCE|1|a|C|1496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain 7

mRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA