IL_3JCJ_014

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3101

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCJ|1|A|C|274
3JCJ|1|A|C|275
3JCJ|1|A|U|276
3JCJ|1|A|G|277
3JCJ|1|A|A|278
3JCJ|1|A|A|279
3JCJ|1|A|U|280
3JCJ|1|A|C|281
*
3JCJ|1|A|G|359
3JCJ|1|A|U|360
3JCJ|1|A|G|361
3JCJ|1|A|A|362
3JCJ|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains