IL_3JCJ_016

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

3JCJ|1|A|A|504, 3JCJ|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_016 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.1261

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

3JCJ|1|A|G|481
3JCJ|1|A|A|482
3JCJ|1|A|A|483
3JCJ|1|A|C|484
*
3JCJ|1|A|G|496
3JCJ|1|A|A|497
3JCJ|1|A|G|498
3JCJ|1|A|U|499
3JCJ|1|A|G|500
3JCJ|1|A|A|501
3JCJ|1|A|A|502
3JCJ|1|A|A|503
3JCJ|1|A|A|504
3JCJ|1|A|A|505
3JCJ|1|A|G|506
3JCJ|1|A|A|507
3JCJ|1|A|A|508
3JCJ|1|A|C|509

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24