IL_3JCJ_042

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

3JCJ|1|A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_042 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1479

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3JCJ|1|A|G|1031
3JCJ|1|A|A|1032
3JCJ|1|A|U|1033
3JCJ|1|A|G|1034
*
3JCJ|1|A|C|1121
3JCJ|1|A|G|1122
3JCJ|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16

Chain d

50S ribosomal protein L36