IL_3JCJ_050

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_050 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3JCJ|1|A|A|1262
3JCJ|1|A|U|1263
3JCJ|1|A|A|1264
3JCJ|1|A|A|1265
3JCJ|1|A|G|1266
3JCJ|1|A|U|1267
3JCJ|1|A|A|1268
3JCJ|1|A|A|1269
*
3JCJ|1|A|U|2011
3JCJ|1|A|G|2012
3JCJ|1|A|A|2013
3JCJ|1|A|A|2014
3JCJ|1|A|A|2015
3JCJ|1|A|U|2016
3JCJ|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32