IL_3JCJ_053

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_053 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1366

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3JCJ|1|A|C|1357
3JCJ|1|A|G|1358
3JCJ|1|A|A|1359
3JCJ|1|A|G|1360
3JCJ|1|A|G|1361
*
3JCJ|1|A|C|1370
3JCJ|1|A|G|1371
3JCJ|1|A|U|1372
3JCJ|1|A|A|1373
3JCJ|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain W

50S ribosomal protein L28

Chain b

50S ribosomal protein L34