IL_3JCJ_059

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

3JCJ|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_059 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.2928

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3JCJ|1|A|U|1467
3JCJ|1|A|U|1468
3JCJ|1|A|A|1469
3JCJ|1|A|A|1470
3JCJ|1|A|G|1471
*
3JCJ|1|A|U|1520
3JCJ|1|A|G|1521
3JCJ|1|A|A|1522
3JCJ|1|A|U|1523
3JCJ|1|A|G|1524
3JCJ|1|A|A|1525

Current chains

Chain A

23S ribosomal RNA

Nearby chains