IL_3JCJ_077

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_077 not in the Motif Atlas

Homologous match to IL_4WF9_076

Geometric discrepancy: 0.1362

The information below is about IL_4WF9_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

3JCJ|1|A|G|1933
3JCJ|1|A|C|1934
*
3JCJ|1|A|G|1964
3JCJ|1|A|C|1965
3JCJ|1|A|A|1966
3JCJ|1|A|C|1967

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain f

Translation initiation factor IF-2