IL_3JCJ_094

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

3JCJ|1|A|A|2572, 3JCJ|1|A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_094 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.1538

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

3JCJ|1|A|C|2512
3JCJ|1|A|A|2513
*
3JCJ|1|A|U|2571
3JCJ|1|A|A|2572
3JCJ|1|A|C|2573
3JCJ|1|A|G|2574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain I

50S ribosomal protein L13