IL_3JCJ_108

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

3JCJ|1|g|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_108 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3JCJ|1|g|A|44
3JCJ|1|g|G|45
*
3JCJ|1|g|C|396
3JCJ|1|g|A|397
3JCJ|1|g|U|398

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain f

Translation initiation factor IF-2

Chain y

30S ribosomal protein S16