IL_3JCJ_118

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_118 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.148

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3JCJ|1|g|C|132
3JCJ|1|g|U|133
3JCJ|1|g|G|134
3JCJ|1|g|C|135
3JCJ|1|g|C|136
*
3JCJ|1|g|G|227
3JCJ|1|g|A|228
3JCJ|1|g|U|229
3JCJ|1|g|G|230

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20

Chain y

30S ribosomal protein S16