IL_3JCJ_185

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGGC*GCGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_185 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2788

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JCJ|1|A|C|1357
3JCJ|1|A|G|1358
3JCJ|1|A|A|1359
3JCJ|1|A|G|1360
3JCJ|1|A|G|1361
3JCJ|1|A|C|1362
*
3JCJ|1|A|G|1369
3JCJ|1|A|C|1370
3JCJ|1|A|G|1371
3JCJ|1|A|U|1372
3JCJ|1|A|A|1373
3JCJ|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain W

50S ribosomal protein L28

Chain b

50S ribosomal protein L34