IL_3JCN_009

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

3JCN|1|A|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.213

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCN|1|A|C|274
3JCN|1|A|C|275
3JCN|1|A|U|276
3JCN|1|A|G|277
3JCN|1|A|A|278
3JCN|1|A|A|279
3JCN|1|A|U|280
3JCN|1|A|C|281
*
3JCN|1|A|G|359
3JCN|1|A|U|360
3JCN|1|A|G|361
3JCN|1|A|A|362
3JCN|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains