IL_3JCN_036
3D structure
- PDB id
- 3JCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 3JCN|1|A|A|1127, 3JCN|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCN_036 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0877
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
3JCN|1|A|G|1024
3JCN|1|A|G|1025
3JCN|1|A|G|1026
3JCN|1|A|A|1027
3JCN|1|A|A|1028
3JCN|1|A|A|1029
3JCN|1|A|C|1030
*
3JCN|1|A|G|1124
3JCN|1|A|G|1125
3JCN|1|A|A|1126
3JCN|1|A|A|1127
3JCN|1|A|G|1128
3JCN|1|A|A|1129
3JCN|1|A|U|1130
3JCN|1|A|G|1131
3JCN|1|A|U|1132
3JCN|1|A|A|1133
3JCN|1|A|A|1134
3JCN|1|A|C|1135
3JCN|1|A|G|1136
3JCN|1|A|G|1137
3JCN|1|A|G|1138
3JCN|1|A|G|1139
3JCN|1|A|C|1140
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
Coloring options: