IL_3JCN_064

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3JCN|1|A|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0968

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3JCN|1|A|U|1712
3JCN|1|A|A|1713
3JCN|1|A|U|1714
3JCN|1|A|G|1715
3JCN|1|A|U|1716
3JCN|1|A|A|1717
3JCN|1|A|G|1718
*
3JCN|1|A|U|1742
3JCN|1|A|G|1743
3JCN|1|A|A|1744
3JCN|1|A|A|1745
3JCN|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains