IL_3JCN_067

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

3JCN|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_067 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.1227

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

3JCN|1|A|G|1770
3JCN|1|A|C|1771
*
3JCN|1|A|G|1980
3JCN|1|A|A|1981
3JCN|1|A|U|1982

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2