IL_3JCN_094

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

3JCN|1|A|G|2576, 3JCN|1|A|A|2577

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_094 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1284

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

3JCN|1|A|C|2510
3JCN|1|A|U|2511
3JCN|1|A|C|2512
*
3JCN|1|A|G|2574
3JCN|1|A|C|2575
3JCN|1|A|G|2576
3JCN|1|A|A|2577
3JCN|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3