IL_3JCN_117

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAC*GUG

Length

8 nucleotides

Bulged bases

3JCN|1|a|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_117 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.3553

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JCN|1|a|C|63
3JCN|1|a|G|64
3JCN|1|a|A|65
3JCN|1|a|A|66
3JCN|1|a|C|67
*
3JCN|1|a|G|102
3JCN|1|a|U|103
3JCN|1|a|G|104

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain x

30S ribosomal protein S20