IL_3JCN_164

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_164 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.099

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3JCN|1|a|C|1303
3JCN|1|a|G|1304
3JCN|1|a|G|1305
3JCN|1|a|A|1306
3JCN|1|a|U|1307
3JCN|1|a|U|1308
*
3JCN|1|a|A|1329
3JCN|1|a|U|1330
3JCN|1|a|G|1331
3JCN|1|a|A|1332
3JCN|1|a|A|1333
3JCN|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S13