IL_3JCN_175

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

3JCN|1|A|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_175 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1792

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

3JCN|1|A|A|844
3JCN|1|A|A|845
3JCN|1|A|U|846
3JCN|1|A|U|847
3JCN|1|A|C|848
*
3JCN|1|A|G|930
3JCN|1|A|U|931
3JCN|1|A|U|932
3JCN|1|A|A|933
3JCN|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30