IL_3JCN_186

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_186 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2936

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JCN|1|A|G|2107
3JCN|1|A|A|2108
3JCN|1|A|U|2109
3JCN|1|A|G|2110
*
3JCN|1|A|C|2179
3JCN|1|A|U|2180
3JCN|1|A|U|2181
3JCN|1|A|U|2182

Current chains

Chain A

23S ribosomal RNA

Nearby chains