IL_3JCN_193

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

3JCN|1|a|A|1394

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_193 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2777

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

3JCN|1|a|G|922
3JCN|1|a|A|923
3JCN|1|a|C|924
*
3JCN|1|a|G|1392
3JCN|1|a|U|1393
3JCN|1|a|A|1394
3JCN|1|a|C|1395

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S5