IL_3JCN_194

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

3JCN|1|a|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_194 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1335

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

3JCN|1|a|G|925
3JCN|1|a|G|926
3JCN|1|a|G|927
3JCN|1|a|G|928
*
3JCN|1|a|C|1389
3JCN|1|a|U|1390
3JCN|1|a|U|1391

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain z

messenger RNA