IL_3JCN_205

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3JCN|1|A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_205 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3868

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3JCN|1|A|C|2129
3JCN|1|A|U|2130
3JCN|1|A|U|2131
3JCN|1|A|U|2132
3JCN|1|A|G|2133
3JCN|1|A|A|2134
3JCN|1|A|A|2135
3JCN|1|A|G|2136
*
3JCN|1|A|U|2155
3JCN|1|A|G|2156
3JCN|1|A|G|2157
3JCN|1|A|A|2158
3JCN|1|A|G|2159

Current chains

Chain A

23S ribosomal RNA

Nearby chains