IL_3JCS_011

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGUGGUUG*CUCAUGA

Length

16 nucleotides

Bulged bases

3JCS|1|1|G|169, 3JCS|1|1|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|1|U|164
3JCS|1|1|C|165
3JCS|1|1|G|166
3JCS|1|1|U|167
3JCS|1|1|G|168
3JCS|1|1|G|169
3JCS|1|1|U|170
3JCS|1|1|U|171
3JCS|1|1|G|172
*
3JCS|1|1|C|285
3JCS|1|1|U|286
3JCS|1|1|C|287
3JCS|1|1|A|288
3JCS|1|1|U|289
3JCS|1|1|G|290
3JCS|1|1|A|291

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain G

ribosomal protein L8e

Chain I

ribosomal protein L13e

Chain a

ribosomal protein L29