IL_3JCS_015
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUU*AC
- Length
- 5 nucleotides
- Bulged bases
- 3JCS|1|1|U|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_015 not in the Motif Atlas
- Geometric match to IL_7KVT_002
- Geometric discrepancy: 0.3107
- The information below is about IL_7KVT_002
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
3JCS|1|1|G|408
3JCS|1|1|U|409
3JCS|1|1|U|410
*
3JCS|1|7|A|19
3JCS|1|7|C|20
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain W
- ribosomal protein L24
- Chain l
- ribosomal protein L39e
Coloring options: