IL_3JCS_016
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 3JCS|1|1|U|439, 3JCS|1|1|A|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_016 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1631
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
3JCS|1|1|G|417
3JCS|1|1|C|418
3JCS|1|1|A|419
3JCS|1|1|C|420
*
3JCS|1|1|G|431
3JCS|1|1|A|432
3JCS|1|1|G|433
3JCS|1|1|U|434
3JCS|1|1|G|435
3JCS|1|1|A|436
3JCS|1|1|A|437
3JCS|1|1|A|438
3JCS|1|1|U|439
3JCS|1|1|A|440
3JCS|1|1|G|441
3JCS|1|1|A|442
3JCS|1|1|A|443
3JCS|1|1|C|444
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- ribosomal protein L22
- Chain W
- ribosomal protein L24
- Chain l
- ribosomal protein L39e
Coloring options: