IL_3JCS_021
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCA*UUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_021 not in the Motif Atlas
- Geometric match to IL_4LFB_010
- Geometric discrepancy: 0.2779
- The information below is about IL_4LFB_010
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
3JCS|1|1|C|495
3JCS|1|1|C|496
3JCS|1|1|A|497
*
3JCS|1|1|U|557
3JCS|1|1|U|558
3JCS|1|1|G|559
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain F
- ribosomal protein L6e
- Chain c
- ribosomal protein L30
- Chain f
- ribosomal protein L32e
- Chain g
- ribosomal protein L33e
Coloring options: