IL_3JCS_022
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAC*G(OMU)U
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_022 not in the Motif Atlas
- Geometric match to IL_4KNQ_002
- Geometric discrepancy: 0.1786
- The information below is about IL_4KNQ_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
3JCS|1|1|A|697
3JCS|1|1|A|698
3JCS|1|1|C|699
*
3JCS|1|1|G|846
3JCS|1|1|OMU|847
3JCS|1|1|U|848
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain P
- ribosomal protein L18e
Coloring options: