IL_3JCS_040

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

3JCS|1|1|G|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_040 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1629

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3JCS|1|1|A|1034
3JCS|1|1|G|1035
3JCS|1|1|U|1036
*
3JCS|1|1|A|1156
3JCS|1|1|U|1157

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain P

ribosomal protein L18e

Chain S

ribosomal protein L21e

Chain b

ribosomal protein L29e

Chain c

ribosomal protein L30