IL_3JCS_057
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGACGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 3JCS|1|1|C|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_057 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1715
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
3JCS|1|1|G|1479
3JCS|1|1|G|1480
3JCS|1|1|A|1481
3JCS|1|1|C|1482
3JCS|1|1|G|1483
3JCS|1|1|A|1484
3JCS|1|1|A|1485
3JCS|1|1|G|1486
*
3JCS|1|1|U|1507
3JCS|1|1|G|1508
3JCS|1|1|G|1509
3JCS|1|1|A|1510
3JCS|1|1|C|1511
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
- Chain W
- ribosomal protein L24
- Chain Z
- ribosomal protein L28e
- Chain f
- ribosomal protein L32e
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