IL_3JCS_059

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUG*CUA

Length

7 nucleotides

Bulged bases

3JCS|1|1|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_059 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.4871

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JCS|1|1|U|1489
3JCS|1|1|A|1490
3JCS|1|1|U|1491
3JCS|1|1|G|1492
*
3JCS|1|1|C|1501
3JCS|1|1|U|1502
3JCS|1|1|A|1503

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 7

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

ribosomal protein L28e

Chain f

ribosomal protein L32e