IL_3JCS_061
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCCAAC*GUAC
- Length
- 10 nucleotides
- Bulged bases
- 3JCS|1|1|U|1621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_061 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.2059
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
3JCS|1|1|G|1607
3JCS|1|1|C|1608
3JCS|1|1|C|1609
3JCS|1|1|A|1610
3JCS|1|1|A|1611
3JCS|1|1|C|1612
*
3JCS|1|1|G|1620
3JCS|1|1|U|1621
3JCS|1|1|A|1622
3JCS|1|1|C|1623
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- ribosomal protein L19e
- Chain T
- ribosomal protein L22
- Chain l
- ribosomal protein L39e
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