IL_3JCS_071

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_071 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3588

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

3JCS|1|2|G|81
3JCS|1|2|G|82
3JCS|1|2|G|83
3JCS|1|2|A|84
3JCS|1|2|A|85
*
3JCS|1|2|U|582
3JCS|1|2|OMC|583
3JCS|1|2|C|584

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain J

ribosomal protein L14

Chain X

ribosomal protein L24e