IL_3JCS_077

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAUGC*GUAUAUCG

Length

14 nucleotides

Bulged bases

3JCS|1|2|U|405, 3JCS|1|2|A|421, 3JCS|1|2|C|425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73044.1

Basepair signature

cWW-R-tSS-tWW-tWW-cWW

Number of instances in this motif group

7

Unit IDs

3JCS|1|2|U|402
3JCS|1|2|G|403
3JCS|1|2|A|404
3JCS|1|2|U|405
3JCS|1|2|G|406
3JCS|1|2|C|407
*
3JCS|1|2|G|419
3JCS|1|2|U|420
3JCS|1|2|A|421
3JCS|1|2|U|422
3JCS|1|2|A|423
3JCS|1|2|U|424
3JCS|1|2|C|425
3JCS|1|2|G|426

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 3

26S gamma ribosomal RNA

Chain A

ribosomal protein L2

Chain m

ribosomal protein L43e