IL_3JCS_082

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*G(OMC)AU

Length

6 nucleotides

Bulged bases

3JCS|1|2|A|555

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_082 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.1764

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

3JCS|1|2|G|522
3JCS|1|2|C|523
*
3JCS|1|2|G|553
3JCS|1|2|OMC|554
3JCS|1|2|A|555
3JCS|1|2|U|556

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains