IL_3JCS_083

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAA(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

3JCS|1|2|C|533, 3JCS|1|2|C|552

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|2|C|523
3JCS|1|2|C|524
3JCS|1|2|A|525
3JCS|1|2|A|526
3JCS|1|2|A2M|527
3JCS|1|2|U|528
3JCS|1|2|G|529
3JCS|1|2|C|530
3JCS|1|2|C|531
3JCS|1|2|U|532
3JCS|1|2|C|533
3JCS|1|2|OMG|534
3JCS|1|2|U|535
*
3JCS|1|2|A|549
3JCS|1|2|C|550
3JCS|1|2|G|551
3JCS|1|2|C|552
3JCS|1|2|G|553

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains