IL_3JCS_085

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)G*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_085 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1405

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

3JCS|1|2|G|640
3JCS|1|2|OMG|641
3JCS|1|2|G|642
*
3JCS|1|2|C|1423
3JCS|1|2|C|1424
3JCS|1|2|U|1425

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain H

ribosomal protein L13

Chain T

ribosomal protein L22